VOL. 114 (2025)
Dublin Core
Title
VOL. 114 (2025)
Collection Items
NUBO: A Transparent Python Package for Bayesian Optimization
NUBO, short for Newcastle University Bayesian Optimisation, is a Bayesian optimization framework for the optimization of expensive-to-evaluate black-box functions, such as physical experiments and computer simulators. Bayesian optimization is a…
mdendro: An R Package for Extended Agglomerative Hierarchical Clustering
mdendro is an R package that provides a comprehensive collection of linkage methods for agglomerative hierarchical clustering on a matrix of proximity data (distances or similarities), returning a multifurcated dendrogram or multidendrogram.…
ebnm: An R Package for Solving the Empirical Bayes Normal Means Problem Using a Variety of Prior Families
The empirical Bayes normal means (EBNM) model is important to many areas of statistics, including (but not limited to) multiple testing, wavelet denoising, and gene expression analysis. There are several existing software packages that can fit EBNM…
Exploring Data Subsets with vtree
Variable trees are a new method for the exploration of discrete multivariate data. They display nested subsets and corresponding frequencies and percentages. Manual calculation of these quantities can be laborious, especially when there are many…
hmmTMB: Hidden Markov Models with Flexible Covariate Effects in R
Hidden Markov models (HMMs) are widely applied in studies where a discrete-valued process of interest is observed indirectly. They have for example been used to model behavior from human and animal tracking data, disease status from medical data, and…