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                <text>: clustered data, covariance matrix estimator, object orientation, simulation, R.</text>
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                <text>Clustered covariances or clustered standard errors are very widely used to account for&#13;
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sciences. They are employed to adjust the inference following estimation of a standard&#13;
least-squares regression or generalized linear model estimated by maximum likelihood.&#13;
Although many publications just refer to “the” clustered standard errors, there is a surprisingly wide variety of clustered covariances, particularly due to different flavors of bias&#13;
corrections. Furthermore, while the linear regression model is certainly the most important application case, the same strategies can be employed in more general models&#13;
(e.g., for zero-inflated, censored, or limited responses). In R, functions for covariances&#13;
in clustered or panel models have been somewhat scattered or available only for certain&#13;
modeling functions, notably the (generalized) linear regression model. In contrast, an&#13;
object-oriented approach to “robust” covariance matrix estimation – applicable beyond&#13;
lm() and glm() – is available in the sandwich package but has been limited to the case of&#13;
cross-section or time series data. Starting with sandwich 2.4.0, this shortcoming has been&#13;
corrected: Based on methods for two generic functions (estfun() and bread()), clustered and panel covariances are provided in vcovCL(), vcovPL(), and vcovPC(). Moreover, clustered bootstrap covariances are provided in vcovBS(), using model update()&#13;
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provided as well as an assessment of the methods’ performance in a simulation study</text>
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                <text>: abundance, detection, JAGS, N-mixture model, R, R-INLA, unmarked, wildlife</text>
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                <text>Successful management of wildlife populations requires accurate estimates of abundance. Abundance estimates can be confounded by imperfect detection during wildlife&#13;
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performance of R-INLA to two other common approaches: JAGS (via the runjags package for R), which uses Markov chain Monte Carlo and allows Bayesian inference, and&#13;
the unmarked package for R, which uses maximum likelihood and allows frequentist inference. We show that R-INLA is an attractive option for analyzing N-mixture models&#13;
when (i) fast computing times are necessary (R-INLA is 10 times faster than unmarked&#13;
and 500 times faster than JAGS), (ii) familiar model syntax and data format (relative&#13;
to other R packages) is desired, (iii) survey-level covariates of detection are not essential,&#13;
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Audubon Society</text>
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                <text>The Data Envelopment Analysis Toolbox is a new package for MATLAB that includes&#13;
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code for the standard radial input, output and additive measures, allowing for constant&#13;
and variable returns to scale, as well as recent developments related to the directional&#13;
distance function, and including both desirable and undesirable outputs when measuring&#13;
efficiency and productivity; i.e., Malmquist and Malmquist-Luenberger indices. Bootstrapping to perform statistical analysis is also included. This paper describes the methodology and implementation of the functions, and reports numerical results using a reliable&#13;
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Erasmus Research Institute of Management&#13;
Erasmus University Rotterdam</text>
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                <text>Zigzag Expanded Navigation Plots in R: The R Package zenplots</text>
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                <text>: R, data visualization, data analysis, graphics, grid, loon.</text>
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                <text>We describe the features and implementation of the R package zenplots (zigzag expanded navigation plots) for displaying high-dimensional data according to the recently&#13;
proposed zenplots.&#13;
By default, zenplots lay out alternating one- and two-dimensional plots in a zigzag-like&#13;
pattern where adjacent axes share the same variate. Zenplots are especially useful when&#13;
subsets of pairs can be identified as of particular interest by some measure, or as not&#13;
meaningfully comparable, or when pairs of variates can be ordered in terms of potential&#13;
interest to view, or the number of pairs is too large for more traditional layouts such as&#13;
a scatterplot matrix. They also allow an essentially arbitrary layout of plots. A highdimensional space can be explored in a zenplot (zenplot()) by navigating through lower&#13;
dimensional subspaces along a zenpath (zenpath()) which orders the dimensions (i.e.,&#13;
variates) visited according to some measure of interestingness; see Hofert and Oldford&#13;
(2018) for an application to S&amp;P 500 constituent data.&#13;
The R package zenplots provides compact displays for high-dimensional data via the&#13;
notion of zenplots, grouping of variates, and customizable displays of zigzag layouts. It&#13;
accommodates different graphical systems including the base graphics package of R Core&#13;
Team (2020b), the package grid of R Core Team (2020a) (and hence packages like ggplot2&#13;
of Wickham et al. 2020), and the interactive graphical package loon of Waddell and&#13;
Oldford (2020). zenplots handles groups of variates, partial and fully missing data, and&#13;
more. One important feature is that zenplot() and its auxiliary functions in zenplots&#13;
distinguish layout from plotting which allows one to freely choose and create one- and twodimensional plot functions; predefined functions are exported for all graphical systems.&#13;
All R plots in this paper are reproducible with the vignette "selected_features"&#13;
(available in zenplots ≥ 0.0-2).</text>
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                <text>Marius Hofert</text>
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                <text>https://www.jstatsoft.org/article/view/v095i04</text>
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                <text>University of Waterloo</text>
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                <text>Fajar bagus W</text>
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                  <text>VOLUME 95 Tahun 2020</text>
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                <text>Computationally Efficient Simulation of Queues: The R Package queuecomputer</text>
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                <text>queues, queueing theory, discrete event simulation, operations research, approximate Bayesian computation, R</text>
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                <text>Large networks of queueing systems model important real-world systems such as&#13;
MapReduce clusters, web-servers, hospitals, call centers and airport passenger terminals.&#13;
To model such systems accurately, we must infer queueing parameters from data. Unfortunately, for many queueing networks there is no clear way to proceed with parameter&#13;
inference from data. Approximate Bayesian computation could offer a straightforward&#13;
way to infer parameters for such networks if we could simulate data quickly enough.&#13;
We present a computationally efficient method for simulating from a very general set&#13;
of queueing networks with the R package queuecomputer. Remarkable speedups of more&#13;
than 2 orders of magnitude are observed relative to the popular DES packages simmer&#13;
and simpy. We replicate output from these packages to validate the package.&#13;
The package is modular and integrates well with the popular R package dplyr. Complex queueing networks with tandem, parallel and fork/join topologies can easily be built&#13;
with these two packages together. We show how to use this package with two examples:&#13;
a call center and an airport terminal.</text>
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            <description>An entity primarily responsible for making the resource</description>
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                <text>Anthony Ebert&#13;
</text>
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            <name>Source</name>
            <description>A related resource from which the described resource is derived</description>
            <elementTextContainer>
              <elementText elementTextId="87302">
                <text>https://www.jstatsoft.org/article/view/v095i05</text>
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            <name>Publisher</name>
            <description>An entity responsible for making the resource available</description>
            <elementTextContainer>
              <elementText elementTextId="87303">
                <text>Queensland University&#13;
of Technology&#13;
ACEMS&#13;
</text>
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            <name>Date</name>
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                <text>Fajar bagus W</text>
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                  <text>VOLUME 95 Tahun 2020</text>
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                  <text>https://www.jstatsoft.org/issue/view/v095</text>
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              <description>The file format, physical medium, or dimensions of the resource</description>
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                <text>Patch-Wise Adaptive Weights Smoothing in R</text>
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            <description>The topic of the resource</description>
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                <text> image denoising, patch-wise structural adaptive smoothing, total variation, nonlocal means, R.</text>
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                <text>Image reconstruction from noisy data has a long history of methodological development&#13;
and is based on a variety of ideas. In this paper we introduce a new method called patchwise adaptive smoothing, that extends the propagation-separation approach by using&#13;
comparisons of local patches of image intensities to define local adaptive weighting schemes&#13;
for an improved balance of reduced variability and bias in the reconstruction result. We&#13;
present the implementation of the new method in an R package aws and demonstrate&#13;
its properties on a number of examples in comparison with other state-of-the art image&#13;
reconstruction methods</text>
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                <text>Jörg Polzehl</text>
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                <text>https://www.jstatsoft.org/article/view/v095i06</text>
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            <description>An entity responsible for making the resource available</description>
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                <text>Weierstrass Institute</text>
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                <text>Fajar bagus W</text>
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                  <text>VOLUME 95 Tahun 2020</text>
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              <description>A language of the resource</description>
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                <text>MultiBUGS: A Parallel Implementation of the BUGS Modeling Framework for Faster Bayesian Inference</text>
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            <description>The topic of the resource</description>
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                <text>BUGS, parallel computing, Markov chain Monte Carlo, Gibbs sampling, Bayesian&#13;
analysis, hierarchical models, directed acyclic graph.</text>
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                <text>MultiBUGS is a new version of the general-purpose Bayesian modeling software BUGS&#13;
that implements a generic algorithm for parallelizing Markov chain Monte Carlo (MCMC)&#13;
algorithms to speed up posterior inference of Bayesian models. The algorithm parallelizes evaluation of the product-form likelihoods formed when a parameter has many&#13;
children in the directed acyclic graph (DAG) representation; and parallelizes sampling&#13;
of conditionally-independent sets of parameters. A heuristic algorithm is used to decide&#13;
which approach to use for each parameter and to apportion computation across computational cores. This enables MultiBUGS to automatically parallelize the broad range of&#13;
statistical models that can be fitted using BUGS-language software, making the dramatic&#13;
speed-ups of modern multi-core computing accessible to applied statisticians, without&#13;
requiring any experience of parallel programming. We demonstrate the use of MultiBUGS on simulated data designed to mimic a hierarchical e-health linked-data study&#13;
of methadone prescriptions including 425,112 observations and 20,426 random effects.&#13;
Posterior inference for the e-health model takes several hours in existing software, but&#13;
MultiBUGS can perform inference in only 28 minutes using 48 computational cores.</text>
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                <text>Robert J. B. Goudie</text>
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                <text>https://www.jstatsoft.org/article/view/v095i07</text>
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                <text>The phonics package provides several functions for indexing words by their English&#13;
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early 20th century and predating the digital computer, through to modern digital phonetic algorithms like Phonex, the phonics package provides support for more than a dozen&#13;
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                <text> hierarchical data, multiple imputation, multilevel models, measurement error,&#13;
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                <text>Applications of multiple imputation have long outgrown the traditional context of&#13;
dealing with item nonresponse in cross-sectional data sets. Nowadays multiple imputation is also applied to impute missing values in hierarchical data sets, address confidentiality concerns, combine data from different sources, or correct measurement errors in&#13;
surveys. However, software developments did not keep up with these recent extensions.&#13;
Most imputation software can only deal with item nonresponse in cross-sectional settings and extensions for hierarchical data – if available at all – are typically limited in&#13;
scope. Furthermore, to our knowledge no software is currently available for dealing with&#13;
measurement error using multiple imputation approaches.&#13;
The R package hmi tries to close some of these gaps. It offers multiple imputation&#13;
routines in hierarchical settings for many variable types (for example, nominal, ordinal, or&#13;
continuous variables). It also provides imputation routines for interval data and handles&#13;
a common measurement error problem in survey data: biased inferences due to implicit&#13;
rounding of the reported values. The user-friendly setup which only requires the data and&#13;
optionally the specification of the analysis model of interest makes the package especially&#13;
attractive for users less familiar with the peculiarities of multiple imputation. The compatibility with the popular mice package (Van Buuren and Groothuis-Oudshoorn 2011)&#13;
ensures that the rich set of analysis and diagnostic tools and post-imputation functions&#13;
available in mice can be used easily, once the data have been imputed</text>
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                <text>Kolmogorov-Smirnov test statistic, discontinuous (discrete or mixed) distribution,&#13;
fast Fourier transform, double boundary non-crossing, rectangle probability for uniform order&#13;
statistics</text>
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                <text>The distribution of the Kolmogorov-Smirnov (KS) test statistic has been widely studied under the assumption that the underlying theoretical cumulative distribution function&#13;
(CDF), F(x), is continuous. However, there are many real-life applications in which fitting&#13;
discrete or mixed distributions is required. Nevertheless, due to inherent difficulties, the&#13;
distribution of the KS statistic when F(x) has jump discontinuities has been studied to a&#13;
much lesser extent and no exact and efficient computational methods have been proposed&#13;
in the literature.&#13;
In this paper, we provide a fast and accurate method to compute the (complementary)&#13;
CDF of the KS statistic when F(x) is discontinuous, and thus obtain exact p values of&#13;
the KS test. Our approach is to express the complementary CDF through the rectangle&#13;
probability for uniform order statistics, and to compute it using fast Fourier transform&#13;
(FFT). Secondly, we provide a C++ and an R implementation of the proposed method,&#13;
which fills the existing gap in statistical software. We give also a useful extension of&#13;
the Schmid’s asymptotic formula for the distribution of the KS statistic, relaxing his&#13;
requirement for F(x) to be increasing between jumps and thus allowing for any general&#13;
mixed or purely discrete F(x). The numerical performance of the proposed FFT-based&#13;
method, implemented both in C++ and in the R package KSgeneral, available from&#13;
https://CRAN.R-project.org/package=KSgeneral, is illustrated when F(x) is mixed,&#13;
purely discrete, and continuous. The performance of the general asymptotic formula is&#13;
also studied</text>
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                <text>Fajar bagus W</text>
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