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                <text>This article introduces the R package BayesCTDesign for two-arm randomized Bayesian&#13;
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BayesCTDesign, which is available from the Comprehensive R Archive Network, has two&#13;
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two-arm trials with equal sample sizes per arm. The package BayesCTDesign allows a&#13;
user to study Gaussian, Poisson, Bernoulli, Weibull, lognormal, and piecewise exponential outcomes. Power for two-sided hypothesis tests at a user-defined α is estimated via&#13;
simulation using a test within each simulation replication that involves comparing a 95%&#13;
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                <text>: imputation, Bayesian, missing covariate, nonlinear, interaction, multi-level, survival, joint model, R, JAG</text>
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                <text>Missing data occur in many types of studies and typically complicate the analysis.&#13;
Multiple imputation, either using joint modeling or the more flexible fully conditional&#13;
specification approach, are popular and work well in standard settings. In settings involving nonlinear associations or interactions, however, incompatibility of the imputation&#13;
model with the analysis model is an issue often resulting in bias. Similarly, complex outcomes such as longitudinal or survival outcomes cannot be adequately handled by standard&#13;
implementations. In this paper, we introduce the R package JointAI, which utilizes the&#13;
Bayesian framework to perform simultaneous analysis and imputation in regression models&#13;
with incomplete covariates. Using a fully Bayesian joint modeling approach it overcomes&#13;
the issue of uncongeniality while retaining the attractive flexibility of fully conditional&#13;
specification multiple imputation by specifying the joint distribution of analysis and imputation models as a sequence of univariate models that can be adapted to the type of&#13;
variable. JointAI provides functions for Bayesian inference with generalized linear and&#13;
generalized linear mixed models and extensions thereof as well as survival models and&#13;
joint models for longitudinal and survival data, that take arguments analogous to the&#13;
corresponding well known functions for the analysis of complete data from base R and&#13;
other packages. Usage and features of JointAI are described and illustrated using various&#13;
examples and the theoretical background is outlined.</text>
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                <text>Nicole S. Erler</text>
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                <text>https://www.jstatsoft.org/article/view/v100i20</text>
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                <text> Bayesian inference, clinical trial, extrapolation, historical control, operating characteristics, prior, probability of success, robust analysis.</text>
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                <text>Use of historical data in clinical trial design and analysis has shown various advantages such as reduction of number of subjects and increase of study power. The metaanalytic-predictive (MAP) approach accounts with a hierarchical model for between-trial&#13;
heterogeneity in order to derive an informative prior from historical data. In this paper,&#13;
we introduce the package RBesT (R Bayesian evidence synthesis tools) which implements&#13;
the MAP approach with normal (known sampling standard deviation), binomial and&#13;
Poisson endpoints. The hierarchical MAP model is evaluated by Markov chain Monte&#13;
Carlo (MCMC). The MCMC samples representing the MAP prior are approximated with&#13;
parametric mixture densities which are obtained with the expectation maximization algorithm. The parametric mixture density representation facilitates easy communication of&#13;
the MAP prior and enables fast and accurate analytical procedures to evaluate properties&#13;
of trial designs with informative MAP priors. The paper first introduces the framework of&#13;
robust Bayesian evidence synthesis in this setting and then explains how RBesT facilitates&#13;
the derivation and evaluation of an informative MAP prior from historical control data.&#13;
In addition we describe how the meta-analytic framework relates to further applications&#13;
including probability of success calculations.</text>
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                <text>Sebastian Weber</text>
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                <text>https://www.jstatsoft.org/article/view/v100i19</text>
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                <text>BFpack: Flexible Bayes Factor Testing of Scientific Theories in R</text>
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                <text>: Bayes factors, hypothesis testing, equality/order constrained hypotheses, R.</text>
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                <text>There have been considerable methodological developments of Bayes factors for hypothesis testing in the social and behavioral sciences, and related fields. This development&#13;
is due to the flexibility of the Bayes factor for testing multiple hypotheses simultaneously,&#13;
the ability to test complex hypotheses involving equality as well as order constraints on&#13;
the parameters of interest, and the interpretability of the outcome as the weight of evidence provided by the data in support of competing scientific theories. The available&#13;
software tools for Bayesian hypothesis testing are still limited however. In this paper we&#13;
present a new R package called BFpack that contains functions for Bayes factor hypothesis testing for the many common testing problems. The software includes novel tools for&#13;
(i) Bayesian exploratory testing (e.g., zero vs positive vs negative effects), (ii) Bayesian&#13;
confirmatory testing (competing hypotheses with equality and/or order constraints), (iii)&#13;
common statistical analyses, such as linear regression, generalized linear models, (multivariate) analysis of (co)variance, correlation analysis, and random intercept models, (iv)&#13;
using default priors, and (v) while allowing data to contain missing observations that are&#13;
missing at random.</text>
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                <text>https://www.jstatsoft.org/article/view/v100i18</text>
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                <text>Tilburg University</text>
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                <text>Fajar bagus W</text>
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                  <text>VOLUME 100 Tahun 2021</text>
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                <text>Informed Bayesian Inference for the A/B Test</text>
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                <text>: model comparison, Bayes factor, prior elicitation, Bayesian estimation.</text>
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                <text>Booming in business and a staple analysis in medical trials, the A/B test assesses&#13;
the effect of an intervention or treatment by comparing its success rate with that of a&#13;
control condition. Across many practical applications, it is desirable that (1) evidence&#13;
can be obtained in favor of the null hypothesis that the treatment is ineffective; (2)&#13;
evidence can be monitored as the data accumulate; (3) expert prior knowledge can be&#13;
taken into account. Most existing approaches do not fulfill these desiderata. Here we&#13;
describe a Bayesian A/B procedure based on Kass and Vaidyanathan (1992) that allows&#13;
one to monitor the evidence for the hypotheses that the treatment has either a positive&#13;
effect, a negative effect, or, crucially, no effect. Furthermore, this approach enables one to&#13;
incorporate expert knowledge about the relative prior plausibility of the rival hypotheses&#13;
and about the expected size of the effect, given that it is non-zero. To facilitate the wider&#13;
adoption of this Bayesian procedure we developed the abtest package in R. We illustrate&#13;
the package options and the associated statistical results with a fictitious business example&#13;
and a real data medical example</text>
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                <text>Quentin F. Gronau</text>
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            <description>A related resource from which the described resource is derived</description>
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              <elementText elementTextId="88156">
                <text>https://www.jstatsoft.org/article/view/v100i17</text>
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            <name>Publisher</name>
            <description>An entity responsible for making the resource available</description>
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              <elementText elementTextId="88157">
                <text>University of Amsterdam</text>
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            <name>Date</name>
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                <text>Fajar bagus W</text>
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                  <text>VOLUME 100 Tahun 2021</text>
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            <description>A name given to the resource</description>
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                <text>A Bayesian Approach for Model-Based Clustering of Several Binary Dissimilarity Matrices: The dmbc Package in R</text>
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                <text>: Bayesian data analysis, dissimilarity matrices, information criteria, multidimensional scaling, MCMC, MDS, mixture models, model-based clustering, three-way MDS.</text>
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                <text>We introduce the new package dmbc that implements a Bayesian algorithm for clustering a set of binary dissimilarity matrices within a model-based framework. Specifically, we&#13;
consider the case when S matrices are available, each describing the dissimilarities among&#13;
the same n objects, possibly expressed by S subjects (judges), or measured under different&#13;
experimental conditions, or with reference to different characteristics of the objects themselves. In particular, we focus on binary dissimilarities, taking values 0 or 1 depending on&#13;
whether or not two objects are deemed as dissimilar. We are interested in analyzing such&#13;
data using multidimensional scaling (MDS). Differently from standard MDS algorithms,&#13;
our goal is to cluster the dissimilarity matrices and, simultaneously, to extract an MDS&#13;
configuration specific for each cluster. To this end, we develop a fully Bayesian three-way&#13;
MDS approach, where the elements of each dissimilarity matrix are modeled as a mixture&#13;
of Bernoulli random vectors. The parameter estimates and the MDS configurations are&#13;
derived using a hybrid Metropolis-Gibbs Markov Chain Monte Carlo algorithm. We also&#13;
propose a BIC-like criterion for jointly selecting the optimal number of clusters and latent&#13;
space dimensions. We illustrate our approach referring both to synthetic data and to a&#13;
publicly available data set taken from the literature. For the sake of efficiency, the core&#13;
computations in the package are implemented in C/C++. The package also allows the&#13;
simulation of multiple chains through the support of the parallel package.&#13;
</text>
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            <description>An entity primarily responsible for making the resource</description>
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                <text>Sergio Venturini</text>
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            <description>A related resource from which the described resource is derived</description>
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              <elementText elementTextId="88145">
                <text>https://www.jstatsoft.org/article/view/v100i16</text>
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            <description>An entity responsible for making the resource available</description>
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              <elementText elementTextId="88146">
                <text>Università Cattolica del Sacro Cuore</text>
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                <text>Fajar bagus W</text>
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                <text>English</text>
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                <text>BNPmix is an R package for Bayesian nonparametric multivariate density estimation, clustering, and regression, using Pitman-Yor mixture models, a flexible and robust&#13;
generalization of the popular class of Dirichlet process mixture models. A variety of&#13;
model specifications and state-of-the-art posterior samplers are implemented. In order to&#13;
achieve computational efficiency, all sampling methods are written in C++ and seamless&#13;
integrated into R by means of the Rcpp and RcppArmadillo packages. BNPmix exploits&#13;
the ggplot2 capabilities and implements a series of generic functions to plot and print&#13;
summaries of posterior densities and induced clustering of the data.&#13;
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                <text>University of Milano-Bicocca&#13;
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                <text>vector autoregression, VAR, multivariate, time series, macroeconomics, structural analysis, hierarchical model, forecast, impulse response, identification, Minnesota prior,&#13;
FRED-MD, Bayesian econometrics</text>
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                <text>Vector autoregression (VAR) models are widely used for multivariate time series analysis in macroeconomics, finance, and related fields. Bayesian methods are often employed&#13;
to deal with their dense parameterization, imposing structure on model coefficients via&#13;
prior information. The optimal choice of the degree of informativeness implied by these&#13;
priors is subject of much debate and can be approached via hierarchical modeling. This&#13;
paper introduces BVAR, an R package dedicated to the estimation of Bayesian VAR&#13;
models with hierarchical prior selection. It implements functionalities and options that&#13;
permit addressing a wide range of research problems, while retaining an easy-to-use and&#13;
transparent interface. Features include structural analysis of impulse responses, forecasts,&#13;
the most commonly used conjugate priors, as well as a framework for defining custom&#13;
dummy-observation priors. BVAR makes Bayesian VAR models user-friendly and provides an accessible reference implementation.</text>
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                <text>https://www.jstatsoft.org/article/view/v100i14</text>
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            <description>An entity responsible for making the resource available</description>
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                <text>WU Vienna University&#13;
of Economics and Business</text>
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                <text>Fajar bagus W</text>
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                <text>Shrinkage in the Time-Varying Parameter Model Framework Using the R Package shrinkTVP</text>
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                <text>Bayesian inference, Gibbs sampler, Markov chain Monte Carlo (MCMC), normalgamma prior, time-varying parameter (TVP) models, log-predictive density scores.&#13;
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                <text>Time-varying parameter (TVP) models are widely used in time series analysis to flexibly deal with processes which gradually change over time. However, the risk of overfitting&#13;
in TVP models is well known. This issue can be dealt with using appropriate global-local&#13;
shrinkage priors, which pull time-varying parameters towards static ones. In this paper,&#13;
we introduce the R package shrinkTVP (Knaus, Bitto-Nemling, Cadonna, and FrühwirthSchnatter 2021), which provides a fully Bayesian implementation of shrinkage priors for&#13;
TVP models, taking advantage of recent developments in the literature, in particular&#13;
those of Bitto and Frühwirth-Schnatter (2019) and Cadonna, Frühwirth-Schnatter, and&#13;
Knaus (2020). The package shrinkTVP allows for posterior simulation of the parameters&#13;
through an efficient Markov Chain Monte Carlo scheme. Moreover, summary and visualization methods, as well as the possibility of assessing predictive performance through&#13;
log-predictive density scores, are provided. The computationally intensive tasks have been&#13;
implemented in C++ and interfaced with R. The paper includes a brief overview of the&#13;
models and shrinkage priors implemented in the package. Furthermore, core functionalities are illustrated, both with simulated and real data.</text>
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                <text>https://www.jstatsoft.org/article/view/v100i13</text>
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                <text>Fajar bagus W</text>
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                  <text>VOLUME 100 Tahun 2021</text>
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                <text>Bayesian inference, state-space model, heteroskedasticity, dynamic correlation, dynamic covariance, factor stochastic volatility, Markov chain Monte Carlo, MCMC, leverage&#13;
effect, asymmetric return distribution, heavy tails, financial time series</text>
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                <text>Stochastic volatility (SV) models are nonlinear state-space models that enjoy increasing popularity for fitting and predicting heteroskedastic time series. However, due to the&#13;
large number of latent quantities, their efficient estimation is non-trivial and software that&#13;
allows to easily fit SV models to data is rare. We aim to alleviate this issue by presenting&#13;
novel implementations of five SV models delivered in two R packages. Several unique&#13;
features are included and documented. As opposed to previous versions, stochvol is now&#13;
capable of handling linear mean models, conditionally heavy tails, and the leverage effect&#13;
in combination with SV. Moreover, we newly introduce factorstochvol which caters for&#13;
multivariate SV. Both packages offer a user-friendly interface through the conventional&#13;
R generics and a range of tailor-made methods. Computational efficiency is achieved via&#13;
interfacing R to C++ and doing the heavy work in the latter. In the paper at hand, we&#13;
provide a detailed discussion on Bayesian SV estimation and showcase the use of the new&#13;
software through various examples</text>
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                <text>Darjus Hosszejni</text>
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              <elementText elementTextId="88101">
                <text>https://www.jstatsoft.org/article/view/v100i12</text>
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            <description>An entity responsible for making the resource available</description>
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              <elementText elementTextId="88102">
                <text>WU Vienna University&#13;
of Economics and Busines</text>
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            <description>A language of the resource</description>
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