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                <text>bbl: Boltzmann Bayes Learner for High-Dimensional Inference with Discrete Predictors in R&#13;
Jun Woo, Jinhua Wang</text>
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                <text> supervised learning, Boltzmann machine, naive Bayes, discriminant analysis, R.</text>
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                <text>Non-regression-based inferences, such as discriminant analysis, can account for the&#13;
effect of predictor distributions that may be significant in big data modeling. We describe bbl, an R package for Boltzmann Bayes learning, which enables a comprehensive&#13;
supervised learning of the association between a large number of categorical predictors&#13;
and multi-level response variables. Its basic underlying statistical model is a collection of&#13;
(fully visible) Boltzmann machines inferred for each distinct response level. The algorithm&#13;
reduces to the naive Bayes learner when interaction is ignored. We illustrate example use&#13;
cases for various scenarios, ranging from modeling of a relatively small set of factors with&#13;
heterogeneous levels to those with hundreds or more predictors with uniform levels such&#13;
as image or genomic data. We show how bbl explicitly quantifies the extra power provided&#13;
by interactions via higher predictive performance of the model. In comparison to deep&#13;
learning-based methods such as restricted Boltzmann machines, bbl-trained models can&#13;
be interpreted directly via their bias and interaction parameters.</text>
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                <text>University of Minnesota, Minneapolis</text>
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                <text>BSL: An R Package for Efficient Parameter Estimation for Simulation-Based Models via Bayesian Synthetic Likelihood</text>
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                <text>approximate Bayesian computation, covariance matrix estimation, Markov chain&#13;
Monte Carlo, likelihood-free methods, pseudo-marginal MCMC, model misspecification, whitening transformation.</text>
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                <text>Bayesian synthetic likelihood (BSL; Price, Drovandi, Lee, and Nott 2018) is a popular&#13;
method for estimating the parameter posterior distribution for complex statistical models&#13;
and stochastic processes that possess a computationally intractable likelihood function.&#13;
Instead of evaluating the likelihood, BSL approximates the likelihood of a judiciously chosen summary statistic of the data via model simulation and density estimation. Compared&#13;
to alternative methods such as approximate Bayesian computation (ABC), BSL requires&#13;
little tuning and requires less model simulations than ABC when the chosen summary&#13;
statistic is high-dimensional. The original synthetic likelihood relies on a multivariate&#13;
normal approximation of the intractable likelihood, where the mean and covariance are&#13;
estimated by simulation. An extension of BSL considers replacing the sample covariance&#13;
with a penalized covariance estimator to reduce the number of required model simulations. Further, a semi-parametric approach has been developed to relax the normality&#13;
assumption. Finally, another extension of BSL aims to develop a more robust synthetic&#13;
likelihood estimator while acknowledging there might be model misspecification. In this&#13;
paper, we present the R package BSL that amalgamates the aforementioned methods and&#13;
more into a single, easy-to-use and coherent piece of software. The package also includes&#13;
several examples to illustrate use of the package and the utility of the methods.</text>
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                <text>Ziwen An</text>
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                <text>https://www.jstatsoft.org/article/view/v101i11</text>
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                <text>Queensland University&#13;
of Technology</text>
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                <text>kernel smoothing, nonparametric, density estimation, regression, projection pursuit, independent component analysis, R</text>
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                <text>This paper introduces the R package FKSUM, which offers fast and exact evaluation of&#13;
univariate kernel smoothers. The main kernel computations are implemented in C++, and&#13;
are wrapped in simple, intuitive and versatile R functions. The fast kernel computations&#13;
are based on recursive expressions involving the order statistics, which allows for exact&#13;
evaluation of kernel smoothers at all sample points in log-linear time. In addition to&#13;
general purpose kernel smoothing functions, the package offers purpose built and readyto-use implementations of popular kernel-type estimators. On top of these basic smoothing&#13;
problems, this paper focuses on projection pursuit problems in which the projection index&#13;
is based on kernel-type estimators of functionals of the projected density.&#13;
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                <text>: dynamic programming, optimal changepoint detection, peak detection, genomic&#13;
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                <text>We describe a new algorithm and R package for peak detection in genomic data sets&#13;
using constrained changepoint models. These detect changes from background to peak&#13;
regions by imposing the constraint that the mean should alternately increase then decrease. An existing algorithm for this problem exists, and gives state-of-the-art accuracy&#13;
results, but it is computationally expensive when the number of changes is large. We&#13;
propose a dynamic programming algorithm that jointly estimates the number of peaks&#13;
and their locations by minimizing a cost function which consists of a data fitting term and&#13;
a penalty for each changepoint. Empirically this algorithm has a cost that is O(N log(N))&#13;
for analyzing data of length N. We also propose a sequential search algorithm that finds&#13;
the best solution with K segments in O(log(K)N log(N)) time, which is much faster than&#13;
the previous O(KN log(N)) algorithm. We show that our disk-based implementation in&#13;
the PeakSegDisk R package can be used to quickly compute constrained optimal models&#13;
with many changepoints, which are needed to analyze typical genomic data sets that have&#13;
tens of millions of observations.</text>
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                <text>Toby Dylan Hocking</text>
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                <text>https://www.jstatsoft.org/article/view/v101i10</text>
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                <text>Northern Arizona University&#13;
</text>
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                <text>Fajar bagus W</text>
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                  <text>VOLUME 101 Tahun 2022</text>
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                  <text>https://www.jstatsoft.org/issue/view/v101</text>
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                <text>lpdensity: Local Polynomial Density Estimation and Inference</text>
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                <text>: kernel-based nonparametrics, local polynomial, density estimation, bandwidth selection, bias correction, robust inference, boundary carpentry, R, Stata</text>
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                <text>Density estimation and inference methods are widely used in empirical work. When&#13;
the underlying distribution has compact support, conventional kernel-based density estimators are no longer consistent near or at the boundary because of their well-known&#13;
boundary bias. Alternative smoothing methods are available to handle boundary points&#13;
in density estimation, but they all require additional tuning parameter choices or other&#13;
typically ad hoc modifications depending on the evaluation point and/or approach considered. This article discusses the R and Stata package lpdensity implementing a novel&#13;
local polynomial density estimator proposed and studied in Cattaneo, Jansson, and Ma&#13;
(2020, 2022), which is boundary adaptive and involves only one tuning parameter. The&#13;
methods implemented also cover local polynomial estimation of the cumulative distribution function and density derivatives. In addition to point estimation and graphical&#13;
procedures, the package offers consistent variance estimators, mean squared error optimal&#13;
bandwidth selection, robust bias-corrected inference, and confidence bands construction,&#13;
among other features. A comparison with other density estimation packages available in&#13;
R using a Monte Carlo experiment is provided.</text>
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              <elementText elementTextId="88228">
                <text>Matias D. Cattaneo</text>
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            <name>Source</name>
            <description>A related resource from which the described resource is derived</description>
            <elementTextContainer>
              <elementText elementTextId="88229">
                <text>https://www.jstatsoft.org/article/view/v101i02</text>
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            <name>Publisher</name>
            <description>An entity responsible for making the resource available</description>
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              <elementText elementTextId="88230">
                <text>Princeton University</text>
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            <name>Date</name>
            <description>A point or period of time associated with an event in the lifecycle of the resource</description>
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                <text>January 2022</text>
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            <name>Contributor</name>
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              <elementText elementTextId="88232">
                <text>Fajar bagus W</text>
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                <text>English</text>
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                  <text>VOLUME 101 Tahun 2022</text>
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                <elementText elementTextId="88208">
                  <text>https://www.jstatsoft.org/issue/view/v101</text>
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                  <text>Fajar bagus W</text>
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              <description>A language of the resource</description>
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            <description>A name given to the resource</description>
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                <text>missSBM: An R Package for Handling Missing Values in the Stochastic Block Model</text>
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            <description>The topic of the resource</description>
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              <elementText elementTextId="88336">
                <text>: network, missing data, stochastic block model</text>
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            <description>An account of the resource</description>
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                <text>The stochastic block model is a popular probabilistic model for random graphs. It is&#13;
commonly used to cluster network data by aggregating nodes that share similar connectivity patterns into blocks. When fitting a stochastic block model to a partially observed&#13;
network, it is important to consider the underlying process that generates the missing&#13;
values, otherwise the inference may be biased. This paper presents missSBM, an R package that fits stochastic block models when the network is partially observed, i.e., the&#13;
adjacency matrix contains not only 1s or 0s encoding the presence or absence of edges,&#13;
but also NAs encoding the missing information between pairs of nodes. This package implements a set of algorithms to adjust the binary stochastic block model, possibly in the&#13;
presence of external covariates, by performing variational inference suitable for several&#13;
observation processes. Our implementation automatically explores different block numbers to select the most relevant model according to the integrated classification likelihood&#13;
criterion. The integrated classification likelihood criterion can also help determine which&#13;
observation process best fits a given dataset. Finally, missSBM can be used to perform&#13;
imputation of missing entries in the adjacency matrix. We illustrate the package on&#13;
a network dataset consisting of interactions between political blogs sampled during the&#13;
2007 French presidential election</text>
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                <text>Pierre Barbillon</text>
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            <description>A related resource from which the described resource is derived</description>
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              <elementText elementTextId="88339">
                <text>https://www.jstatsoft.org/article/view/v101i12</text>
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            <name>Publisher</name>
            <description>An entity responsible for making the resource available</description>
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              <elementText elementTextId="88340">
                <text>University Paris-Saclay,&#13;
AgroParisTech, INRAE</text>
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            <name>Date</name>
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                <text>January 2022</text>
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          <element elementId="37">
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              <elementText elementTextId="88342">
                <text>Fajar bagus W</text>
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            <description>A language of the resource</description>
            <elementTextContainer>
              <elementText elementTextId="88344">
                <text>English</text>
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            <description>The nature or genre of the resource</description>
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                  <text>VOLUME 101 Tahun 2022</text>
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                <elementText elementTextId="88208">
                  <text>https://www.jstatsoft.org/issue/view/v101</text>
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              <name>Language</name>
              <description>A language of the resource</description>
              <elementTextContainer>
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                  <text>English</text>
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      <description>A resource consisting primarily of words for reading. Examples include books, letters, dissertations, poems, newspapers, articles, archives of mailing lists. Note that facsimiles or images of texts are still of the genre Text.</description>
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                <text>nference Tools for Markov Random Fields on Lattices: The R Package mrf2d</text>
              </elementText>
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            <description>The topic of the resource</description>
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              <elementText elementTextId="88292">
                <text>Markov random fields, image analysis, R, Gibbs random fields, Potts model, texture</text>
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                <text>Markov random fields on two-dimensional lattices are behind many image analysis&#13;
methodologies. mrf2d provides tools for statistical inference on a class of discrete stationary Markov random field models with pairwise interaction, which includes many of the&#13;
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                <text>English</text>
              </elementText>
            </elementTextContainer>
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          <element elementId="51">
            <name>Type</name>
            <description>The nature or genre of the resource</description>
            <elementTextContainer>
              <elementText elementTextId="88290">
                <text>Text</text>
              </elementText>
            </elementTextContainer>
          </element>
        </elementContainer>
      </elementSet>
    </elementSetContainer>
  </item>
</itemContainer>
